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The rigid registration process involved an initial alignment of the surface centroids followed by an iterative closest point (ICP) step (Besl & McKay 1992) to refine results.
Commonly, an initial alignment of the peptide sequences is performed in a preprocessing step.
In ENSEMBL, an initial alignment of mRNA and protein is performed against the genome.
Fast rotational matching in real space relies on an initial alignment of the center of masses of the two subtomograms.
We did an initial alignment of the R2R3 MYBs of each species using ClustalW2.0 and then removed sequences that lacked the R2R3 repeats.
Sequences for Sam50 and Omp85 homologues were collected from the Conserved Domains Database [ 17] from the entry Bac_surface_Ag giving an initial alignment of 70 sequences.
Similar(50)
(A ) Initial alignment of the injectisomes to the common origin.
Calculation of an initial alignment for the two coordinate systems 3.
Two datasets consisting of 50 alignments were generated, one with an initial alignment length of 1,000 positions, one with 200 positions.
Two different sources of variants were used: (1) single nucleotide variants (SNV) and structural variants (SV) from genome sequencing (2.1) and (2) SNVs and SVs called in an initial alignment round of the RNA-Seq reads to the TAIR10 reference genome with PALMapper (relevant parameters: -M 4 -G 4 -E 6 -I 25000 -NI 1 -S).
It starts with an initial alignment which provides an estimate of the amino acid composition at each position of the respective conserved stretch that is found.
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