Exact(6)
Wherever possible, phylogenetic tree analysis of homeodomains, synteny information and gene structure data were combined to verify that an identified sequence represented the orthologue in that species.
Genomic protein databases were also searched by BLAST using the closest related organism with an identified sequence as the reference genome.
Combine the mass of the precursor peptide, the mass of the first peak of an identified sequence ladder, the sequence ladder and the final peak of the sequence ladder to obtain a peptide sequence tag (21).
Among the 101 mutations with an identified sequence, 16 (15.8%) were deletions or insertions, 53 (52.5%) were G C to A T transitions and 17 (16.8%) were G C to T A transversions.
This assay, for the most part, has refined in vitro and transfection studies that evaluate the capacity of a distinct factor to bind an identified sequence within a known promoter by demonstrating an in vivo association with the same binding site in chromatin reviewed in (1, 2).
An identified sequence was considered a putative protein kinase if the kinase domain alignment covered at least 50% of the Pfam domain model2,3.
Similar(54)
First, organisms missing a given component were searched using the ortholog from the closest species with a positively identified sequence.
The table for unidentified sequences was queried for sequences that had a fully identified sequence belonging to Inocybe (including sequences annotated as Mallocybe) as their closest BLAST match.
The sequence was further confirmed using a forward primer from newly identified sequence and a reverse primer from known sequence.
It converts output from the GenBank "Blast 2 Sequences" online alignment software (www.ncbi.nlm.nih.gov) to a manageable database of identified sequence variants.
A set of rules is applied to generate a recycle superstructure for every identified sequence.
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