Exact(4)
The reasons behind the removal of these taxa are the same as if an extended majority rule tree was to be constructed (see above).
At the end of each MRP analysis, we had a collection of equally good MRP solutions, from which we produced a greedy consensus tree (also known as an extended majority consensus).
An extended majority consensus tree is shown in supplementary figure S1, Supplementary Material online.
Summarizing the 2,007 gene trees into an extended Majority Rule Consensus (eMRC) phylogeny or using them as input to construct a coalescent-based species phylogeny resulted in topologies that were identical to the concatenation phylogeny (fig. 1).
Similar(56)
Not all extended majority rule analyses show Vespoidea to be monophyletic.
Otherwise, if only a multiple sequence alignment is given, a weight-based extended majority rule consensus tree will be built from it and used as the backbone of the network.
Topological concordance among the set of phylogenies was examined by using the program "consense" from the Phylip package (Felsenstein 1981) to build a consensus tree (extended majority rule).
Similar to the traditional extended majority rule method, as implemented in the CONSENS program of the PHYLIP package [ 46], the bootstrap- based extended majority rule method is a two-stage procedure.
On the other hand, in the extended majority rule consensus tree approach, a strict consensus tree is first constructed and then the remaining compatible clusters are added to it following their overall frequency in the considered tree collection.
For the second type of input, our algorithm reconstructs a consensus phylogenetic tree using the weight-based extended majority rule consensus tree method described above and then adds to it the remaining highly ranked incompatible clusters which are presented as reticulation branches.
A consensus tree was constructed with the program consense, included in PHYLIP, using the extended majority rule criterion.
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