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Exact(60)
Test of Hardy-Weinberg equilibrium was performed using an exact test [27].
If the correlation is known, the proposed p-value provides an exact test.
We construct an exact test for the non-inferiority of odds ratio based on the inferential model, which is a valid prior-free probabilistic inference method.
Deviations from Hardy Weinberg expectations were assessed using an exact test in controls.
In addition, we excluded SNPs that failed an exact test of Hardy-Weinberg equilibrium in each population separately.
In each study, we tested for HWE by using the χ2 test or an exact test among the controls by using the genhwi command in Stata 9.2 [20].
For variants in which one of the genotype groups had less than 5 individuals, HWE was calculated using an exact test.
Following [16], an exact test for Hardy-Weinberg Equilibrium (HWE) [37] was further carried out within each breed separately on the 45,291 remaining SNPs.
Levels of shape and size variation were compared using an exact test based on a Monte Carlo approach with 10000 replicates.
The statistical significance of congruence in the up or down regulation of overlapping genes was determined using an exact test in the binomial distribution [42], [43], where the hypothesized probability of success was fixed at 0.5.
If the final model happened to retain only one predictor variable, the test was repeated with unrestricted permutation of raw data, which provides an exact test for the one-way case [41].
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