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We examined a small number of high-scoring PSMs where ProPhosSI fails to validate an assignment made by an experienced analyst.
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Using simple rules based on the choice of a set of dihedral angles for assigning PPIIDSSP, led to a good agreement with the assignment made by other SSAMs.
The assignment rule was defined to have a maximum coverage of all assignments made by these SSAMs.
The O 1s peak was fitted with one component at 529.8 eV, which was assigned to oxygen in the Cu2O layer (assignment made by STM below).
Note that all the above registry-lookup identifiers are also authority-assigned identifiers, that is, they are produced by assignment made by some authority.
The assignment made by SEGNO remains closest to DSSP with a C3 of 88.9%.
Fibre tracts were based on the fibre assignment made by using the continuous tracking approach [ 25] to obtain a three-dimensional tract reconstruction.
> -wrap-foot> Figure 3a and b show some examples where the MRF assignment and the assignment made by the MP, PATH and GA algorithms are different, and illustrate how these differences influence the total number of conserved interactions.
We also assigned putative locations of the main types of grain tissue (endosperm, embryo and pericarp) to the transcripts in each set clusters based on the assignment made by Wan et al. [ 5].
This assignment is coherent with distribution of PPII based on the assignments made by other SSAMs (see Table 1 for a summary).
To check the accuracy of taxonomic assignments made by STAP, we compared STAP assignments with those derived from the top BLASTN match a commonly used high-throughput method.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com