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However, they cannot explain why a consecutive collagen layer is laid down with an alternating alignment.
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DE 896 has an alternate alignment south of Glasgow called DE 896 Alternate (DE 896 Alt).
DE 24 features an alternate alignment, DE 24 Alternate (DE 24 Alt)., that runs to the north of the route from US 113 in Stockley to DE 24 near Midway.
DE 10 is a four-lane divided highway called Lebanon Road between U.S. Route 13 (US 13) in Camden and DE 1. DE 10 has one alternate route, DE 10 Alternate (DE 10 Alt)., which provides an alternate alignment to DE 10 between Willow Grove and Lebanon, passing through Woodside and Rising Sun.
Legislative Routes 380 and 381 provided for an alternate alignment of I-35E along Shepard Road and a northerly extension of the Lafayette Freeway, while Legislative Route 382 was a "four-lane parkway facility" that the MHD could build along the original alignment of I-35E, but without a connection to I-94.
Some researches focus on the organization of collagen fibers into planes of alternating alignment and found that it played an important role in annulus fibrosus tissue function.
As a result, many alternate alignments are possible.
These genes were evaluated for mis-mappings by examining secondary and alternate alignments of the reads aligning to each candidate as shown in Figure S14.
A more detailed description of how we distinguished true structural variants from alignment artifacts over these intervals and an associated R package to aid in visualizing alternate alignments will be described in a companion paper (Halper-Stromberg, et al. In preparation).
At http://as2ts.html.gov/AS2TS/LGA/lga_pdblist_plots.html we provide a service whereby the user may generate alternate alignments based on defined points of comparison representing residue positions along the peptide chain.
This is to be expected, since any variant near the end of a read greatly reduces the confidence in the alignments, as alternate alignments without the variant become more plausible.
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