Sentence examples for an alignment has been from inspiring English sources

Traditionally, the task of selecting the best seed matches to include in an alignment has been performed by using Dynamic Programming (DP) (Pearson and Lipman, 1988).

Gap penalty values are designed to reduce the score when a sequence alignment has been disturbed by gaps.

The method used for inferring a nucleotide substitution in a tri-species alignment has been described previously [ 22, 23].

Once a global network alignment has been estimated, we can analyze it to gather more localized, granular insights, e.g. estimating functional orthology across species.

When using P1 (from 3VRI) as a reference, the backbone alignment has been measured with an RMSD of 1.23 and 1.78 Å with P2 (3VRJ) and P3 (3UPrespectivelyely, as shown in Fig. 4.

The increased complexity of a multiple-view coarse alignment has been recognized in [1] with a solution proposed by model graphs and visibility consistency tests.

It can be seen that a proper range-bin alignment has been obtained.

In our genome-wide TFBS motif prediction tools GLECLUBS [ 12] and eGLECLUBS [ 13] for prokaryotes through comparative genomics, a similar metric with ungapped alignment has been proposed.

Specifically, a 4%to6%6% increase in varus alignment has been shown to increase loading in the medial compartment of the knee by up to 20% during single limb stance [ 34].

Therefore, a phylogenetic approach to mtDNA sequence alignment has been formulated [6] that has proven useful and thus forms the basis for haplotype annotation in the EMPOP database (http://www.empop.org).

A collection of portable web services, initially for multiple sequence alignment, has been developed.