Sentence examples for an alignment data from inspiring English sources

An iterative search (PSI-BLAST) with this region (exons 16 - 23) alone produced an alignment (data not shown), with a sequence fragment of zebrafish (Danio rerio) periostin marked by a highly conserved 5-fold 13-amino acid repeat [ 39], covering exons 16 - 20 of the human periostin query.

An alignment data from MARNA provided the consensus secondary structure on the first row along with the primary structure information in the rest of the rows (Fig. 1).

Sequences shorter than 100 amino acids were omitted from analyses as those tended to align poorly even in a guided alignment (data not shown).

The MRSA252 genomic region that spans these two genes is nearly identical to DNA present in the genome of Listeria monocytogenes, as revealed by a BLASTn alignment (data not shown).

A nucleotide alignment (data not shown) shows that the three BKJ coding regions only differ by one or two nucleotide changes and therefore have a greater than 99% identity between the three sequences.

The sequence similarity of TGU25_Claw1 to the claw genes found in the chicken is rather low with only 49-55% identity observed from an amino acid alignment (data not shown).

In order to examine the structural features of each AtWRKY, we performed a multiple sequence alignment (data not shown).

The predicted peptide for the Pgd3 locus contains an N-terminal extension that is absent from the predicted PGD1 and PGD2 proteins in a multiple sequence alignment (data not shown).

The Ensembl platform [ 32] used to map the MHC in zebrafish provides a combination of alignment data, genomic location, detailed transcript structures to compare functional domains of orthologous proteins, in conjunction with multi-species comparisons.

Given a multiple sequence alignment data d from 3 taxa at v homologous sites, i.e. d ∈ {Y, R}3 × v, the likelihood function over the tree space T k is simplified from (2) as follows: (5) l d (t k ) = ∏ q = 1 v l d ·, q (t k ) = ∏ i = 0 7 (l i (t k ) ) c i, where l i (k t) is the likelihood of the the i-th site pattern as in (4) and c i is the count of sites with pattern i.

Dot-plot viewers are an alternative way of visualizing whole genome alignment data with a particular emphasis on large-scale changes in synteny and indel detection.