Sentence examples for an actual alignment from inspiring English sources

Without an actual alignment, we can still determine that the identity of two sequences is below a given threshold by counting short words.

DALI's actual alignment process requires a similarity search after the two proteins' distance matrices are built; this is normally conducted via a series of overlapping submatrices of size 6x6.

Therefore, regardless of the actual alignment there must be a 4 residue insertion somewhere in EF-2 of the Eukaryotes and Archaea.

Instead of performing the actual alignment, Cd-hit uses a short word filtering algorithm to compute sequence similarity, therefore, it achieves significant speed-up compared to alignment based clustering tools.

Although specific details are lacking, the aligner uses a suffix tree to find related reference sequences and that the actual alignment step uses multiple reference sequences and secondary structure information to carryout the alignment.

But the most compelling finding concerns the actual alignment of fortunes of managers and shareholders.

This formula facilitates the calculations without computation of the actual alignment.

In fact the AlkB domain had the highest average pairwise sequence identity, as seen in Table 2 (see Figure 3 for the actual alignment).

We evaluate the overall CPU time used by the algorithms to fit the scoring parameters and to perform the actual alignment.

In our simulated sequence families, since there are no actual alignment errors in the simulated dataset, REAP is discarding true phylogenetic information in the data.

For the entries in the twilight zone, we need to calculate the actual alignment scores to decide if we can place them in the result set.