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This procedure is repeated until a path is found or no more ambiguous regions are left.
However, there are still some ambiguous regions in the disparity maps to make them not accurate enough due to occlusion regions that occurred and discontinuities that mismatched.
Ambiguous regions were excluded.
Ambiguous regions in the alignment were excluded from phylogenetic analyses.
Ambiguous regions and all sites including a gap were removed from the alignment.
BLAST algorithm was used when needed and ambiguous regions were trimmed according to an embedded mask.
Ambiguous regions in the resulting alignment were identified and removed using GBlocks 0.91b [92].
Therefore, any ambiguous regions in the alignment should be excluded from subsequent analyses.
Alignments were manually adjusted and ambiguous regions were excluded from the alignments using Mesquite 2.5 [79].
Ambiguous regions were deleted from the alignment before phylogenetic analysis, for a final length of 678 bp.
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Additionally, likelihood bootstrap values from the reduced dataset obtained by excluding alignment-ambiguous regions are indicated.
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