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Phylogenetic trees were reconstructed using PhyML (Guindon and Gascuel 2003) implementing the WAG + I + GAMMA evolutionary model (Reeves 1992; Yang 1993; Whelan and Goldman 2001), collecting five bootstrap samples for the bootstrap amalgamation procedure linked to gene-tree species-tree reconciliation.
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The method implemented in AnGST is also somewhat robust to gene phylogeny reconstruction errors through bootstrap tree amalgamation, the procedure of resolving uncertainties by incorporating reconciliation into the tree-building process.
First, we define the Process of Amalgamation of contingency tables t i,i=1,…,n.
This process involved deletion of duplicate items and amalgamation of items where overlap was clear.
After having amalgamated a group of contingency tables, we can define the Measure of Amalgamation.
"An Amazing a Capella Amalgamation".
Las Vegas is an amalgamation of many neighbourhoods.
"It was really an amalgamation effect".
This amalgamation was known as Suika Shintō.
This amalgamation is an incendiary mix.
It's this amalgamation of our personalities.
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