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As expected, NJ was the lowest, since it always infers one and only one tree.
When the substitution rate was low, all methods had a median NTR of 1, while MP inferred fewer trees on average when the substitution rate was higher (except NJ which always infers a single tree).
For the seven amino acids with T/C-ending codons, the analysis always infers that C-ending codons are favored over the T-ending ones in the two outcrossing species (i.e., with positive γ values).
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Since a learner's knowledge state is always inferred we can also attach probabilities to each item.
There is no question that "the one proposition may be justly inferred from the other", and that "it is always inferred".
God's will does, of course, determine our decisions in the logical sense: if we know his will for a creature, we can always infer that creature's fate.
Can we always infer from the extension of one concept's coinciding with that of a second, that every object which falls under the first concept also falls under the second?
These results are also interesting because the first dogma of molecular biology – that DNA makes RNA makes protein – has dominated in the methodologies used to identify novel proteins, which are almost always inferred from known or predicted gene or transcript sequences.
Much like the HKY85: π model from figure 2, they always infer conservation.
For instance, the value of α is always inferred with an error smaller than 5%.
Using high-density single nucleotide polymorphism (SNP) markers, one can almost always infer haplotype configurations of each member in a family given all individuals being typed.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com