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The phrase "although there were subtle differences in" is correct and usable in written English.
It can be used to introduce a contrast or qualification regarding variations in a particular subject or context.
Example: "Although there were subtle differences in their approaches, both teams achieved similar results."
Alternatives: "even though there were slight variations in" or "despite the minor differences in".
Exact(3)
In addition, both PL-MSCs and FBS-MSCs showed similar results in term of ALP staining, osteogenic differentiation, and RT-PCR, although there were subtle differences in morphology, growth pattern, and adhesive properties.
Using BRASS with either striatal or putaminal SBRs, there was no significant difference between the values of sensitivity and specificity across all reconstruction and calibration strategies although there were subtle differences in false negative rates using non-calibrated data, particularly for striatal SBR.
Although there were subtle differences in trial inclusion criteria and diagnostic criteria, baseline characteristics were broadly similar and are deemed to be generally reflective of IPF patients with mild-to-moderate disease seen in clinical practice.
Similar(57)
Although there are subtle differences in the structure of the sterile ridges between the species, the authors were not confident that enough specimens had been examined to establish that these differences were consistent.
There were subtle differences in the three diets studied.
However, there were subtle differences in the identified transcripts.
One program is about as good as the next, although there are subtle differences that will mean something to the technologically advanced.
Although there are subtle differences between these, the overall assignment to favorable or unfavorable risk categories is concordant.
The detail of growth factor receptor kinase ER interplay remains controversial in such cells, although it seems likely that there are subtle differences in pathway detail versus tamoxifen resistant states.
Obviously, there are subtle differences in the binding interfaces between the different IGFBPs.
As observed in Table 4, there are subtle differences in the MWTP estimates obtained from the different econometric models.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com