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The software excludes existing haplotype inferences, thus allowing for calculation of alternative inferences.
Given p explaining haplotypes, there can also be alternative inferences of genotypes.
Constraints are also formulated for alternative most parsimonious sets of explaining haplotypes as well as for alternative inferences of genotypes.
To introduce a quality measurement of the haplotypes and alternative inferences which have been calculated, a bootstrapping procedure is introduced as follows.
For each most parsimonious set of haplotypes the algorithm therefore computes all alternative inferences of each unphased genotype, independent of the others.
Alternatively, without bootstrapping, the frequencies of the haplotypes in the phased genotypes of all computed alternative inferences can be used similar to bootstrapping counts.
Similar(50)
Standard errors are clustered by year age 18, but significance levels are unchanged under several reasonable alternative inference procedures.
We consider an alternative inference method based on likelihood ratio.
Viterbi training [ 38] and Gibbs sampling [ 39] are possible alternative inference techniques.
In such a case, our method allows a potentially useful alternative: inference with respect to the mean or mode.
For this purpose, we implemented three alternative inference methods: all interactions, shortest paths, and all shortest paths.
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