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We performed additional analyses to determine the sensitivity of our previously described method of defining ethnicity by principal components analysis in stage 2. The alternative classification method we employed was the ANCESTRYMAP [18] program, which uses genotype information from two ancestral populations to estimate admixture in a test population.
This heterogeneity may be better explained under an alternative classification method.
In 139 prototypical arrays, the agreement between PAM50 SSP and PLS-regression was excellent (weighted Kappa: 0.988), indicating the robustness and feasibility of PLS-regression as an alternative classification method to PAM50 SSP.
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Two alternative classification methods were investigated: a supervised machine learning approach and a rule-based approach; each are described and evaluated independently.
Two alternative classification methods, the statistical discriminant analysis and the application of neural networks were also applied to the same problem and the results are compared.
CART or random forest methods could be alternatives to the proposed classification method.
Based on the results, we propose classification method as a promising alternative for GS in plant breeding.
This mirrored the methods used to validate an alternative classification system.
Further, the new method is simpler and more parsimonious than HMM based drought classification method and can be a viable alternative for probabilistic drought classification.
The method is tested for exhaust parts and demonstrates the superiority of some cast irons over others, whereas the intrinsic isotherm mechanical properties suggested an alternative classification.
This boosted classification method allows to model non-linear responses.
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