Using a linear model, we distinguish between constitutive, alternative and alternatively regulated polyadenylation sites.
These homology clusters contain contigs and singletons that represent alternative alleles, alternatively spliced transcripts, and non-overlapping contigs from the same gene and possibly closely related genes in the same family (particularly at the lower e-value).
[GenBank: FJ535564], [GenBank: FJ535565], [GenBank: FJ535566], [GenBank: FJ535567] The vertebrate α-dystrobrevin gene has a complex gene structure, with multiple promoters, alternative 3' exons and alternatively spliced exons.
AS: alternative splice; AE: alternatively spliced exons; CE: constitutively spliced exons; CV: coefficient of variation; EJ: exon-junction; ESE: exonic splicing enhancers; KS: Kolmogorov-Smirnov; WS: Wilk-Shapiro; SS: splice site; ROC: receiver operating characteristic.
Groups B and C are subsets of Group A. AS – Alternative Splicing ASE – Alternatively Spliced Exon CSE – Constitutively Spliced Exon FRFP – Frequency of Reading Frame Preservation The author(s) declares that there are no competing interests.
This large gene.exon effect implies there could have been a lot of alternative splicing, or alternatively that the annotation of the bovine genome was poor, so that some exons weren't real or were only occasionally being transcribed.
The UCSC gene set is larger (~50,000 entries) and less conservative than RefSeq (~20,000 entries), including genes with alternative start sites, alternatively spliced exons and putative but unknown genes.
We identified four alternatively polyadenylated alternative forms of Tbp in the mouse.
Alternatively, an alternative source linking side effects to articles could be employed to supplement our existing analysis with side-effect data.
Alternative splicing events and alternatively spliced genes were identified using a custom perl script based on the alignments of ESTs to the cucumber genome predicted genes.
