The phrase "alternative alignments" is correct and usable in written English.
It can be used in contexts where different arrangements or configurations are being discussed, such as in data analysis, linguistics, or project planning.
Example: "In our research, we explored several alternative alignments to better understand the data patterns."
Alternatives: "different configurations" or "varied arrangements".
We next assess whether the use of a large number of gene sequences from a wide range of animal species, as well as the use of multiple alternative alignments, and the use of amino acids aligned with high confidence only, is enough to recover the expected DLX's evolutionary history.
Furthermore, we evaluate whether the use of a large number of gene sequences from a wide range of animal species, the use of multiple alternative alignments, and the use of amino acids aligned with high confidence only, is enough to recover the accepted DLX evolutionary history.
In this work we evaluate whether the use of a large number of gene sequences from a wide range of animal species, as well as the use of multiple alternative alignments, and the use of amino acids aligned with high confidence only, is enough to recover the expected DLX evolutionary history.
Several alternative alignments of the analogs gave r2 values in the range of 0.8 0.95.
Minami, S., Sawada, K. & Chikenji, G. MICAN: a protein structure alignment algorithm that can handle multiple-chains, inverse alignments, C only models, alternative alignments, and non-sequential alignments.
A crash prediction model proposed in the Highway Safety Manual (HSM) is adopted to evaluate and compare alternative alignments from safety perspective.
The major sequence deviation of animal rhodopsins from non-opsin GPCRs might result from the need to re-accommodate the retinal moiety (see Fig. 2), which is bound to a unique Lys7.43 residue that is located on the same 7th helix as retinal-binding Lys residues in MRs [ 2] but does not align with them either in the standard or alternative alignment (Fig. 1f, Additional file 1: Figures S4, S10a).
The total sight distance deficiency of an alternative alignment is estimated based on (i) the length of the road segments where ASD < SSD and (ii) the significance of sight distance restriction.
In 1957, Dade County Commissioner Ralph Fossey proposed an alternative alignment of the Palmetto Expressway.
First, it should be possible to obtain reliable models for each alternative alignment.
For each alternative alignment, the MODELLER program [11] is used to build an ensemble of one hundred models, all solutions of the same distance geometry problem, but with different initial conditions for the molecular dynamics optimization step.
