Sentence examples for alternative alignment strategies from inspiring English sources

We find that RNA-Seq allelic ratios from standard alignment methods correlate poorly with SNaPshot, but applying alternative alignment strategies and correcting for observed biases significantly improves correlations.

We also explored an alternative, spliced alignment strategy for finding TICs by identifying splicing events within individual reads using our GSNAP program [ 27].

Both alignment strategies yielded similar total mapped reads and coverage.

Similar to sequence alignment strategies, graph alignment can be local or global.

Such a targeted alignment strategy has been highly effective in studying the extent of intragenic alternative splicing in the human genome, even in short reads of only 32 nt [ 20- 23].

Minami, S., Sawada, K. & Chikenji, G. MICAN: a protein structure alignment algorithm that can handle multiple-chains, inverse alignments, C only models, alternative alignments, and non-sequential alignments.

This alignment was used as a reference to which the alternative alignments are compared.

The alignment strategy implemented was L-INS-i [36].

However, redundancy does not necessarily imply alternative alignments.

Thus, only different maximum locations are indicative of alternative alignments.

Our alignment strategy is outlined in Figure 22.