The phrase "alternative alignment" is correct and usable in written English.
It can be used in contexts where different methods or approaches to alignment are being discussed, such as in design, strategy, or data analysis.
Example: "In our project, we explored alternative alignment options to better meet the needs of our clients."
Alternatives: "different alignment" or "varied alignment".
The major sequence deviation of animal rhodopsins from non-opsin GPCRs might result from the need to re-accommodate the retinal moiety (see Fig. 2), which is bound to a unique Lys7.43 residue that is located on the same 7th helix as retinal-binding Lys residues in MRs [ 2] but does not align with them either in the standard or alternative alignment (Fig. 1f, Additional file 1: Figures S4, S10a).
The total sight distance deficiency of an alternative alignment is estimated based on (i) the length of the road segments where ASD < SSD and (ii) the significance of sight distance restriction.
In 1957, Dade County Commissioner Ralph Fossey proposed an alternative alignment of the Palmetto Expressway.
First, it should be possible to obtain reliable models for each alternative alignment.
For each alternative alignment, the MODELLER program [11] is used to build an ensemble of one hundred models, all solutions of the same distance geometry problem, but with different initial conditions for the molecular dynamics optimization step.
A number of alternative alignment and variant detection algorithms and hardware were evaluated.
We next assess whether the use of a large number of gene sequences from a wide range of animal species, as well as the use of multiple alternative alignments, and the use of amino acids aligned with high confidence only, is enough to recover the expected DLX's evolutionary history.
Furthermore, we evaluate whether the use of a large number of gene sequences from a wide range of animal species, the use of multiple alternative alignments, and the use of amino acids aligned with high confidence only, is enough to recover the accepted DLX evolutionary history.
In this work we evaluate whether the use of a large number of gene sequences from a wide range of animal species, as well as the use of multiple alternative alignments, and the use of amino acids aligned with high confidence only, is enough to recover the expected DLX evolutionary history.
Minami, S., Sawada, K. & Chikenji, G. MICAN: a protein structure alignment algorithm that can handle multiple-chains, inverse alignments, C only models, alternative alignments, and non-sequential alignments.
Several alternative alignments of the analogs gave r2 values in the range of 0.8 0.95.
