Sentence examples for alterations data were from inspiring English sources

For identification of DNA copy number alterations, data were smoothed using a local polynomial adaptive weights smoothing procedure for regression problems with additive errors (Hupe et al, 2004; Natrajan et al, 2006).

GALNS gene alteration data were gathered from the primary reports.

One of the most successful approaches to discerning the signal in mutation data or in copy number alteration data is to seek out those genes or regions which are altered at a frequency above a background random model.

As a control of the specificity of STOX1-induced transcriptome alterations, our data were compared with a study where mid-gestation versus normal term placentas were analyzed by microarray analysis [11].

Copy number alteration (CNA) data were obtained from cBio Cancer Genomics Portal in order to use the results of GISTIC which attempts to identify significantly altered regions of amplification or deletion across sets of patients [ 36].

For large-scale alterations, the CGH data were averaged for sliding windows of 130 kb over the relevant chromosomes.

The Kaplan-Meier curves for these analyses are shown in Fig. 3. To further validate the ability of our algorithm to classify tumors into biologically relevant genomic groups, an independent set of 71 NSCLC tumor samples was profiled for copy number alterations, and the data were segmented.

TCGA breast cancer mRNA gene expression, copy number alteration, and clinical data were downloaded from UCSC cancer browser at https://genome-cancer.ucsc.edu/proj/site/hgHeatmap/ (data processed in August 2014).

Not all alterations of data are acts of falsification, while "dropping data points based on a gut feeling" or "failing to publish data that contradicts one's previous research" (e.g. [19]) might often be.

To enable detection of treatment-induced alterations, the data was normalized by individual treatment over time.

In addition to the inclusion of patient data and gene alterations published since 2005, the data were gathered in the context of patient genotypes (i.e., the two GALNS alleles reported from a patient) when available because this allows additional analyses not possible previously.