Sentence examples for alteration data from from inspiring English sources
We projected gene mutation and focal copy number alteration data from various cancer types onto this map.
To identify oncogene candidates within the 9p13 region, we leveraged existing whole genome alteration data from OPLs and oral tumors and global gene expression data from oral tumors.
We then overlay mutation and copy number alteration data from the TCGA endometrial cancer dataset from the cBioPortal using the portal data import dialog.
Using an elastic-net regularized regression method we integrated genomic alteration data from different genomic platforms as well as clinical meta-data from TCGA.
Additionally, we previously identified three transcriptional subtypes of CRC and then identified subtype-specific driver networks by integrating mutation and copy number alteration data from each subtype with a protein signaling network using a random walk approach.
Users can use local models or obtain them from the Pathway Commons [ 11] database using advanced graph searches (neighborhoods, paths between molecules, or common targets/regulators) and overlay genomic alteration data from the cBioPortal for Cancer Genomics [ 12] or expression data from the Gene Expression Omnibus (GEO) [ 13].
Sequence mutation and DNA copy number alteration data for all TCGA GBM cases was obtained from the TCGA data portal [48].
Although this association was only marginal, this could be because the genomic alteration data came from a different cohort.
To identify the genomic alterations for the differentially expressed genes discovered in this project, we took the advantage of the TCGA database, containing recently published large mRNA expression and genomic alteration data, derived from 195 stage I IV CRC patients [ 20].
GALNS gene alteration data were gathered from the primary reports.
We obtained genome-wide copy number alteration (CNA) data from four different SNP array platforms, with a final data set of 398 ovarian tumours, mostly of the serous histological subtype.
