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DOI: http://dx.doi.org/10.7554/eLife.03703.002 Directed evolution using living systems allows selections for improved biomolecule function to be directly coupled to phenotype.

In this report, a novel retroviral vector has been constructed which contains a gene that allows selection for infected cells by a magnet.

Plasmid pBARKS1 contains the bar gene under the control of the trpC promoter, which allows selection for glufosinate ('Basta') resistance.

For the activity screening, the metagenomic library was transferred to the host strain HB101 (Table 1) that has a nonfunctional xylA, which allows selection for growth on xylose.

This effect allows selection for intermediates of complex traits, opening up a more direct route to the trait and thus reducing the time needed for fixation in the population.

Growth on plates containing both chloramphenicol and spectinomycin allows selection for the retrofitted BACs. Figure 1b gives maps of the standard BAC vectors pBeloBAC11 [ 28] and pBACe3.6 [ 29, 30] before and after retrofitting with pRetroNeo and pRetroNeoLucOE respectively.

In about four weeks, the mature leaf color will reveal itself, allowing selections for color and form.

The plasmid also contains two auxotrophic selection markers: URA3 located between the two recombination-sites to select against accidental centromere excision and LEU2 on the residual backbone, allowing selection for the plasmid after centromere excision.

We propose that errors in transcription and translation may allow selection for the intermediate mutations, if the final trait provides a large enough selective advantage.

It may allow selection for individualized treatment.

Applying a full genome scan in each generation allowed selection for different QTL across time.