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The grid spacing of the simulation was set as 4 μm allowing us to simulate ultrasound frequencies up to 258 MHz.
Our systematic method preserves the physical realizability condition while allowing us to simulate the system with only a small number of degrees of freedom.
In this read set, the second paired end read was extended to 75 bases, allowing us to simulate longer reads.
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These simulations were performed on membrane-embedded trimeric models, which allowed us to simulate three different bound states within each simulation systems, as the individual monomers are believed to function independently (no cooperativity).
We describe a simulation environment that allows us to simulate the standard peripheral component interconnect (PCI) bus protocol, as well as modified PCI protocols.
The use of classical molecular dynamics allowed us to simulate the whole extracellular domain; mutations with natural amino acids are also adequately described by the use of available classical force fields, while mutations with unnatural amino acids or unusual residues may require a treatment with ab initio techniques (24).
Although there are other BOINC simulators, none of them allow us to simulate the complete infrastructure of BOINC.
The use of a phased HapMap dataset allowed us to simulate individuals that share common founding populations.
This study design allows us to simulate the impact of TQS use as well as several alternative scenarios of wound management.
We used BoNeSi as a traffic generation tool because it allows us to simulate floods from large-scale bot networks.
We used actual demographic data, obtained from the 2001 census, which allowed us to simulate the spread of an influenza pandemic and the impact of control measures.
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