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PASmiR also offers a fuzzy search engine, allowing querying of miRNA-stress regulatory information by plant species, abiotic stress or miRNA, even when the exact name is unknown.
To facilitate the usage of the database by individual researcher, we have implemented several web based functionalities to the database, allowing querying, annotating and filtering.
The diXa homepage (see Supplementary Fig. S1) provides 'search' and 'browse' sections allowing querying and browsing by studies, samples, compounds, analyses or diseases (see Supplementary Figs.S2 S11).S2 S11
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SPARQL [23] is an easy to handle graph-based query language that allows querying RDF graphs similar like SQL can do with relational databases.
1The Sensor Observation Service SOSS) is an OGC standard, which allows querying sensor data and metadata, as well as representations of observed features, through a web interface.
This computational tool allows querying RNA-Seq data for grapevine berry development [ 30].
Moreover, gene-centric data aggregation services usually do not allow querying of gene sets.
A web interface allows querying the database and the extraction of gene-wise SNV information.
Moreover, the eFG database allows querying a set of genes and retrieves comprehensive information on the gene set.
In addition, it is planned to allow querying the database with keywords related to sub-cellular localization and/or functional domains.
On the other hand, the method we develop in this article allows querying databases with networks of arbitrarily large number of nodes.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com