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In addition, a portion of the PZA nucleotide sequence was reverse complemented to allow alignment with other phages of the cluster.
In (B ), the 4-min time point from the gel shown in (A ) is displayed horizontally to allow alignment with the densitometry profile (larger transcripts are to the right).
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These are mounted inside the chamber on a motorized x-y-z stage, allowing alignment with the beam by external control.
If nothing else, this allowed alignment with several other key structures in the canyon.
The Solexa reads were mapped at increasing coverage onto the 25× GSFLX assembly using SOAP software[ 18], which allows alignments with gaps.
On allowing alignments with a slightly higher probability, we found both the rearrangement chosen by the majority of the programs (VQuest, JOINSOLVER and iHMMune-align, Fig. 5b) and also the rearrangement selected by SoDA (Fig. 5c).
The fly container is mounted on a motorized XZ stage (two Newmark ET-150-21 mounted in XZ configuration; Newmark Systems Inc , RanchoSanta Margarita, CA), which is controlled using a two-axes USB controller (Newmark NSC-A2L; Newmark Systems Inc , RanchoSanta Margarita, CA) to allow alignment of the container wells with the measurement channel outlet for single individual storage.
Thus, HCA allows alignments between very distantly related proteins, with as low as 10%% identity.
In order to further characterize the 66 HRVs identified in the 64 samples, the nucleotide sequences located in the 5'UTR (285 nt) and the VP4/VP2 genes (420 nt) were chosen to allow comparative alignment with sequences of reference serotypes and field strains available in GenBank.
Peripheral clusters are proposed to be more flat; however, myocyte morphology will never allow perfect alignment with the coverslip.
To the best of our knowledge, no corresponding comparative study has been performed in breast tumors that would allow direct alignment with our data.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com