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Secondly to deliver the data; for this a standard data exchange format is desirable.
The system enables communication and data exchange between molecular modelling programs on different computing platforms by employing a general data exchange format, CML Chemical Markup Languagee) [5].
Moreover, at present the only data exchange format is the MDL molfile format (V2000), whereas SMILES export is still on the to-do list.
ODB++ is a proprietary CAD-to-CAM data exchange format used in the design and manufacture of electronic devices.
This "pathway language" is a collaborative effort to create a computer readable data exchange format for biological data.
Here, we propose a standardized spreadsheet-based data exchange format for muteins and related experimental kinetic data.
The Biological Pathway Exchange (BioPAX) format is a collaboratively developed data exchange format for biological pathway data [ 15], that currently uses the PSI-MI ontology internally for modelling associated molecular interactions [ 16].
Notably, the authors also propose a XML standard called RPPAML to overcome the lack of a data exchange format for RPPA data and a standardized annotation.
Features of mzMatch enabled by the R package mzMatch.R including the new PeakML data exchange format and the data analysis pipeline were described by Scheltema et al. (2011).
Such a data exchange format would allow scientists to report their experimental data or models in a standardized way independent from the software used.
The assembled procedure facilitates a precise representation of DbTF functional attributes using the standard GOC-defined gene-association file format (GAF2.0; http://www.geneontology.org/GO.format.gaf-2_0.shtml) and the PSI-MI data exchange format used for recording interaction data (20).
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