Sentence examples for all possible alignments from inspiring English sources

It uses existing aligner and assembler (with minor modifications to keep all possible alignments discovered, details in Section 3.1) to identify regions to which fragments align.

Given two residues of a pair of proteins, the marginal alignment probability is equal to the accumulative probability of all possible alignments of this pair of proteins in which these two residues are aligned to each other.

To ensure that all possible alignments were found, the reference and query files were swapped and each pair was reanalyzed.

We noticed that the seeding algorithms have been developed only to maximize the sensitivity of finding all possible alignments.

This measure is defined as the minimum sum of the scores for all possible alignments of two strings.

We find BWA may be better suited for identifying all possible alignments when a perfect match does not exist for a given query sequence.

As evaluated by Mahony et al. [ 11], the PCC metric combined with the SW ungapped alignment algorithm (PCC/SWU), and the SSD metric combined with SW alignment (SSD/SW) with gap extension equal to 0.5 and gap open equal to 1, are the best two metric and alignment settings on Dataset-1 among the five column similarity metrics associated with their all possible alignment settings.

When Bowtie encounters a short sequence that does not align to a single location, Bowtie can return all the possible alignments for that sequence read which is required by 'Bowstrap'.

For example, Bowtie did not return potential alignments where the reference sequence is shorter than the query sequence, whereas BWA returned all these possible alignments with equal scores.

Our approach considers all the possible alignments of reads to HLA allele sequences, and calculates the marginal likelihood of data from gapped alignments of reads to the reference sequences, in which deletions and insertions as well as SNP sites are naturally considered.

There are ways to align bisulfite colorspace sequences with methylation-aware alignment approaches, which convert bisulfite colorspace sequences to basespace and index all theoretically possible alignments by creating a hash table.