Sentence examples for all arrays were normalized from inspiring English sources

All arrays were normalized with gcrma normalization using the R statistical software package available from Bioconductor [ 17- 19].

All arrays were normalized with gcrma normalization and custom probe definitions based on EntrezGene identifiers using the R statistical software package available on Bioconductor [ 17- 20].

All arrays were normalized using a quantile normalization algorithm [44].

All arrays were normalized by scaling to reach a common target intensity.

Signal intensities from all arrays were normalized to the same background levels with positive and negative controls using Raybiotech array AAH-CYT-7 analysis software.

All arrays were normalized by dCHIP and analyzed by GSEA as described (Subramanian et al., 2005), using MSigDB database v3.1 (http://www.broadinstitute.org/gsea/msigdb/index.jsp).jsp

All arrays are normalized to 100% of the mean value.

All the arrays were normalized by the GCRMA algorithm using a Bioconductor [ 11] (version 2.8.1) package gcrma version 2.14.1.

The raw data for all the arrays were normalized by the MAS 5.0 algorithm using Gene Spring Software 11.0.

Data from all twelve arrays were normalized using GC robust multiarray averaging in Genespring software.

All expression arrays were normalized by the RMA method using the Affymetrix Expression Console.