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For example, half of scaffold 81 from Tcas5.0 aligns between scaffolds 80 and 82 on ChLG5 (Fig. 7 a) while the other half aligns between scaffolds 102 and 103 from ChLG7 (Fig. 7 b).
The 3-OCS-CoA steroid side chain aligns between the FAD cofactor and the putative active-site base, Glu247.
First, we determined the amount of euchromatic sequence that aligns between zebra finch and chicken, but that does not align to G. magnirostris.
Because we cannot directly analyze putatively orthologous isochores owing to the very limited amount of sequence outside of exons that aligns between avian, lizard, and mammalian genomes, we used protein-coding genes whose GC contents at the third positions of codons (GC3) may be calculated from accurate amino acid based alignments.
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The large number of positions not identically aligned between the three alignments made us confident that the alignment space investigated was not too narrow.
Examination of the PSI-BLAST and HHpred alignments revealed several motifs harboring conserved residues aligned between members of these families, further supporting the proposed homologous relationships among them.
Spliced alignments were only considered if 75% (score >0.75) or more bases could be aligned between the genomic sequence and a probe set.
However, it is likely that interest rates will remain aligned between TSB and Lloyds for a period of time after launch to simplify things for customers".
The fee-for-service model, which reimburses providers according to the volume of services they provide, and which still predominates today, likely exacerbates this antagonism because incentives are poorly aligned between providers and insurers.
It was always different when it had a strip aligned between opposite corners of a rectangle, but now it lies across the middle of the shorter sides of the same rectangular arena, along the rugby halfway line.
Plans are not yet finalised and we will look to update on this in due course," said a TSB spokeswoman, adding: "It is likely that interest rates will remain aligned between TSB and Lloyds for a period of time after launch to simplify things for customers who might want to 'stay' with Lloyds, or 'go' to TSB".
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com