Exact(38)
A PF alignment resulted in earlier center of pressure progression (p < 0.007) and a resulting decrease in both internal knee extensor moment (p < 0.001) and quadriceps and soleus muscle activity (p < 0.014) compared to the Neutral and DF alignments without affecting the lower limb support moment.
A set of likely gene orthologs and alignments without uncertain sites by Gblocks, was used to produce single-gene phylogenies of the Roseobacter clade.
As noted, the indicator method is of general utility and could readily be applied to longer sequences or concatenated multi-gene alignments without substantially increasing computation time, which might address some of these limitations.
More specifically, we removed genes with introns, premature stop codons and/or gaps in Multiz alignment, alignments without all 4 species, non-AUG start codon, and genes less than 300 bp.
Alignments without and with outgroups are made available.
We therefore further analyzed alignments without repeats as well as alignments without repeats and without any gaps.
Similar(22)
uce-filtered-alignments-w-gator.tar.gz: UCE individual alignments without outgroups uce-filtered-alignments-without-gator.tar.gz: UCE individual alignments with outgroups uce-probes-used.fasta.gz: Probes targeting UCE loci shared among vertebrate taxa.
uce-filtered-alignments-w-gator.tar.gz: UCE individual alignments without outgroups uce-filtered-alignments-without-gator.tar.gz: UCE individual alignments with outgroups These are concatenated alignments for each of our 2022 supergene alignments.
Thus by introducing local misalignments, the candidate sequence is globally aligned to the template alignment without disrupting the length of the template alignment.
The aligner might prefer an alignment without the deletion near the end, which can lead to a false-positive SNP call in addition to missing the deletion.
By using CCA, can do word alignment without the usual sentence-aligned corpora.
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Justyna Jupowicz-Kozak
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