The phrase "alignments which is a" is not correct in written English due to a subject-verb agreement error.
It can be used in contexts discussing specific types of alignments, but it needs to be rephrased for grammatical accuracy.
Example: "The alignments which are a part of the strategy need to be reviewed."
Alternatives: "alignments that are a" or "alignments which represent a".
THESEUS does not attempt to determine structure-based sequence alignments, which is a distinct bioinformatics problem (Bourne and Weissig, 2003).
Together, these improvements increase significantly the efficiency and accuracy for subtomogram alignments, which is a key factor for the systematic classification of macromolecular complexes in cryo-electron tomograms of whole cells.
Our methods increase significantly the efficiency and accuracy for subtomogram alignments, which is a key factor for the systematic classification of macromolecular complexes in cryo-electron tomograms of whole cells.
If the tires are not in alignment, which is a consequence, the car will not ride smoothly.
A Bayesian approach allows calculation of posterior probabilities of estimated phylogeny and alignment, which is a measure of the confidence in these estimates.
The SWG method is now the standard algorithm for optimal local alignment, which is a representative method in sequence analysis.
We then reversed the direction of the sequences for alignment which is a proven method for detecting cases where alignment is relatively arbitrary [ 30].
The other is complete deletion of entire columns of gapped sites from the alignment, which is a gap-treatment method that is applicable to any phylogenetic inference method.
We have done so by using Tophat for the read alignment, which is a read-mapping tool that can map across and also identify splice junctions.
These haplotypes differ only in one nucleotide (site 267 in our alignment), which is A in the haplotype pyrenaica and G in rupicapra.
Typical post-processing steps include sequence alignment, which is a fundamental step in nearly all applications of deep sequencing technologies, and duplicate read removal, which is a major concern for Illumina sequencing (Kozarewa et al., 2009).
