Sentence examples for alignments were detected from inspiring English sources

Significant similarity of DNA sequences in small, gapless alignments were detected by manual inspection of results from GLAM [ 55], followed by alignment of larger regions, with gaps, by Clustal W or MUSCLE.

Conserved positions in the alignments were detected using BMGE with default parameters and the BLOSUM62 substitution matrix, which represents a good compromise between too stringent and too relaxed matrices to deal with sequences with a large range of similarity values as in the case of global archaeal phylogenies (Criscuolo and Gribaldo 2010).

We replicated this procedure a 1000 times and, then, asked how many times each of the pairs of sites detected as coevolving in the real multiple sequence alignments was detected as significantly supporting coevolution.

A G4-prone fragment of the FASTA alignment was detected.

Between 36 and 96 h, no significant difference in angle alignment is detected, indicating that alignment in the direction of the flow vector is complete after 36 h.

Finally, a supervised search of "+" intergenic regions is performed, so as to insure that all copies of the motif identified by the pairwise alignment are detected.

Local-alignment anchors were detected using PatternHunter (1e-10) [ 41].

Following verification of alignment, 1853 spots were detected as consistently mapped to all gels.

From the alignment, conserved regions were detected and a pair of degenerate primers was designed, with forward degenerate primer, Cys_F (5′-CTCGCTCGHTTCGCCGTCGAYGAG-3′), and reverse degenerate primer, Cys_R (5′-GTTCTTGTGHACYTCDACCTTGAA-3′).

For SAMD9 and SAMD9L genes alignments no significant breakpoints were detected while using GARD, thus the complete alignments were used to establish each gene phylogeny.

Based on the protein sequences alignment, 79 aminoacid substitutions were detected meaning 78.3% of SNPs are nonsynonymous.