Sentence examples for alignments were based on from inspiring English sources

Nucleotide (codon) alignments were based on the amino acid alignments.

Multiple alignments were based on MUSCLE [61] and edited by hand using Jalview [62], and are available upon request.

Codon sequence alignments were based on the protein sequence alignments.

Alignments were based on the EPO pipeline, where avian alignments included only the three named species whereas mammalian alignments were based on the 13 Eutherian mammals.

DNA sequence alignments were based on codons to retain protein alignments.

DNA sequence alignments were based on protein alignments using the Transalign program (Bininda-Emonds 2005).

The most enduring and powerful alignments are based on a shared view of what matters and why.

The SILVA seed alignments are based on alignments published by the ARB project in 2004.

TopHat's heuristic filter for spliced alignments is based on this observation.

The multiple alignments are based on the Ciliate EST sequences compared with the full length sequences of the other organisms.

Our approach for extracting multiple high-scoring alignments is based on an efficient linear scaling approach of Huang and Miller [ 69].