Sentence examples for alignments was tested from inspiring English sources

The presence of saturation in base substitution for each of the alignments was tested using DAMBE5 [ 20].

The distributional proximity of alignments was tested against random expectations by simulating random positions for a1 and a2 sites involved in alignments for an equal number of alignments as in the observed data, with 1000 replicated randomizations for comparison to the observed mean distances to the pseudoautosomal regions.

Both alignments were tested for recombination with the Single Breakpoint Recombination SBPP) tool [87] in the DATAMONKEY web-server [88]; evidence for recombination, inferred by the small sample AIC score, was only found for HIV-1 Control dataset.

To avoid cross-hybridization, all other alignments are tested using the specificity filtering test.

This combined approach, which is applicable to extremely long alignments, is tested with simulations.

The resulting alignments were tested for positive selection by applying test 2. The log-likelihood difference (2Δ L) of these tests was recorded.

Prior to performing selection tests, alignments were tested for recombination using Genetic Algorithms for Recombination Detection analysis (GARD) implemented in Datamonkey.

The rRNA and RPB1 alignments were tested for saturation using the methods of Steel et al. [ 74] and Xia et al. [ 75], implemented in DAMBE.

The specificity and coverage of the resultant alignments are tested against the orthologous groups defined in the eggNOG database v3.0 [ 42].

To minimize the influence of recombination in the PS scan, the alignments were tested for intragenic recombination using GARD (Kosakovsky Pond et al. 2006).

The seed alignments are tested and improved by manual curation, and by application to large databases like the Universal Protein (UniProt) database [ 13].