Sentence examples for alignments was based on from inspiring English sources

The guide tree we used for progressive motif alignments was based on the Euclidian distances between PFMs, which is simpler than the p-value-based alignment trees used by STAMP and produces similar results.

The most enduring and powerful alignments are based on a shared view of what matters and why.

Nucleotide (codon) alignments were based on the amino acid alignments.

Multiple alignments were based on MUSCLE [61] and edited by hand using Jalview [62], and are available upon request.

Codon sequence alignments were based on the protein sequence alignments.

The SILVA seed alignments are based on alignments published by the ARB project in 2004.

DNA sequence alignments were based on protein alignments using the Transalign program (Bininda-Emonds 2005).

Alignments were based on the EPO pipeline, where avian alignments included only the three named species whereas mammalian alignments were based on the 13 Eutherian mammals.

DNA sequence alignments were based on codons to retain protein alignments.

TopHat's heuristic filter for spliced alignments is based on this observation.

The alignments were based on BLOSUM62 matrix with gap opening and gap extension penalties -5 and -2 respectively.