The phrase "alignments that indicate" is correct and usable in written English.
You can use it when discussing relationships or connections that suggest or point to a particular conclusion or outcome.
Example: "The alignments that indicate a correlation between the two variables were clearly visible in the data analysis."
Alternatives: "connections that suggest" or "alignments that show".
We also screened all alignments that indicated elevated dn/ds ratios along the H. desmarestianus branch and where the alternative model differed from the null initially (p < 0.05, df = 1).
Whole genome alignments also indicate that the porcine isolate DPC6026 and poultry strain FI9785 share the same genomic arrangement (not shown).
The alignments results indicate that miRSeq can precisely evaluate the sequencing quality of samples regarding percentage of self-ligation read, read length distribution, and read category.
Sequence alignments indicate that the active site architecture of Ech30 resembles that of endochitinases such as hevamine from the rubber tree (Hevea brasiliensis).
The analyses of primate alignments indicate that a distinct nonsynonymous substitution rate exists at CpG-encoded codons that is not attributable to just selection on amino acid properties.
Full-length sequence alignments indicate that the subgroups depicted in Figure 2 are highly specific for the amino acids that populate the active site.
Read alignments indicate that cDNA is randomly sheared, as ~90% of tags are aligning around ~150 bp (±150) from the 3′ end.
Structure-based sequence alignments indicate that the structural fold, and the PAPS-binding site, is conserved between the two classes.
Sequence alignments indicate that the CTRP 1st to 4th vWA domains exhibit greater conservation, and thereby are perhaps functionally more important than the 5th and 6th domains.
This observation, Blast searches and their alignments indicate that these proteins are not true orthologs but rather pseudoorthologs (xenologs).
