The phrase "alignments that can be" is correct and usable in written English.
It can be used when discussing various types of alignments that are possible or achievable in a specific context.
Example: "The project requires careful consideration of the alignments that can be established between the different teams involved."
Alternatives: "alignments that may be" or "alignments that are possible".
First, this method generates high quality multiple sequence alignments that can be used for phylogenetic reconstructions as well as for diversity measures such as the identification of OTUs.
This mode produces alignments that can be trimmed at one or both extremes in order to optimize the alignment score.
PSSM [ 6- 8] is a useful approximation of sequence alignments that can be easily integrated in to a variety of tools and bioinformatics software packages designed for specific applications [ 9, 10].
With the adoption of a reliable set of orthologous relationships, downstream functional and comparative annotations and alignments that can be used by the entire community could quickly be generated.
Given the huge number of independent multiple sequence alignments that can be harvested from comparative genomics projects, there is a need for efficient tools to quickly summarize the whole phylogenetic signal of the numerous trees inferred from these various loci.
We therefore designed a software suite called REDHORSE that uses genomic alignments, extracts genetic markers, and generates multiple sequence alignments that can be used as input to existing recombination detection algorithms.
Here we study the rheological properties of single-walled carbon nanotube/polythiophene composite dispersions to better understand the alignment that can be achieved during deposition.
Detector architectures include InAs/Ga(In Sb strained-layer superlattices, which create a type-II band alignment that can be tailored to cover a wide range of the mid- and long-wavelength bands by varying the thickness and composition of the constituent materials, and bulk InAsSb-based XBn barrier designs.
Firstly, this example demonstrates the efficiency of improved algorithms for sequence alignment that can be used to identify homologous templates even at very low sequence similarity.
As an alternative to heuristic scoring schemes, there have been also research efforts to develop probabilistic models for sequence alignment that can be used to evaluate and compare potential alignments and to estimate the symbol-to-symbol alignment probabilities.
Each of the pseudo-replicated multiple sequence alignments (PRA) obtained from the original data can be resampled once again to obtain secondary pseudo-replicated multiple sequence alignments (SPRA) that can be, in turn, used to assess the bootstrap support of the tree inferred from PRA.
