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Our mode-1 HOSVD analyses of 16S and 23S rRNA sequence alignments support the hypothesis that even on the level of a single rRNA molecule, an organism's evolution is composed of multiple pathways due to concurrent evolutionary forces that act independently upon different rRNA degrees of freedom.
Protein structural alignments support basic and applied research in molecular biology.
We find that for the hemagglutinin gene, a proportion of sequence alignments support the split of subtype B from subtype C after the split between subtypes A-H3N2 and B, in opposition to the topology enforced in our analysis.
Similar(57)
The similarity scores calculated from alignments supported the phylogenetic results.
COACH analysis is performed with template HMMs derived from the Established Repeats alignments (Supporting Information S2) and the returned "SAM-style reverse scores" are recorded.
The three alignments are always shown with the alignment supporting the SV on top and the two alignments supporting contiguous sequences below.
We summarize whether alignments supporting the SV are better than both of the alignments supporting contiguous fragments with a probability-based score.
Annotation of axolotl no-hit EST/BAC alignments supports the later hypothesis.
The alignments supported the presence of a large deletion in hrpZ1.
The alignments supporting the results of this article are available in the Data Dryad repository, 10.5061/dryad.c801k.
75% rule: More than 75% of the fragment alignments supporting the gene are mappable to multiple genomic loci.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com