Sentence examples for alignments over from inspiring English sources

Examination of competing alignments over many pairs of protein structures demonstrates that I-value can accurately distinguish between competing structural alignments in cases in which other methods either cannot significantly distinguish the quality of these possibilities, or do not agree in the selection of a best one.

In this null-model authors simulate the variability due to the sampling error by first reshuffling each of the alignments over the whole aligned region encompassing both domains and then recalculating the variability of the resulting homogenized domains.

But when we limit analyses of each aligner to the best alignments over all parameters, M-M is comparable or superior to G-M, indicating that MI-GRAAL's NCF is better than GHOST's NCF, while the performance of G-M versus G-G, i.e., of MI-GRAAL's AS versus GHOST's AS, is still data-dependent.

The simulations on multiple homologous sequences also increase the computing time for ROSETTA [ 13]. Figure 3A shows the plot of Cα-RMSD to native of the best model in the top five clusters versus that of the best threading alignments over the same aligned regions (star symbols).

There are two antenna alignments over which the extension will be presented.

Z-score indicates how many standard deviations the current alignment score differs from the average Z-score, calculated from all binding sites alignments over the entire PDB [19].

Intuitively, this ratio measures the average quality of the alignment over aligned and non-aligned sites.

The DAGChainer output from SynMap was filtered to retain only the alignments scoring over 300.

These challenges of creating whole-genome alignments carry over to their representation and analysis.

Once the pupil is inside the white box, the automatic alignment took over and completed the alignment process.

Since all the introns have been spliced out, the reads left in the first stage can be aligned against these sequences to find the alignment over intron/exon boundaries.