The phrase "alignments of the three" is correct and usable in written English.
It can be used in contexts where you are discussing the alignment or arrangement of three entities, concepts, or elements.
Example: "The alignments of the three planets created a spectacular celestial event that captivated astronomers."
Alternatives: "arrangements of the three" or "positions of the three".
According to sequence alignments of the three salt taste receptor genes, we did not identify any inactivation mutations in salt taste receptor genes in cetaceans or Hippopotamidae.
BLAST alignments of the three sRNAs against all sequenced bacteria revealed significant similarities with sequences from the alpha-2 subgroup of the class Proteobacteria.
Three-way alignments of the three crocodilians were compiled for all these loci in order not to bias the outcome of our experimental screening toward one of the two competing hypothesis regarding the position of the gharial.
Therefore we employed an alignment procedure that uses a linear Hidden Markov Model (HMM) as implemented in the software SAM (Sequence Alignment and Modelling system) [ 84] for separate alignments of the three data sets.
The MAFFT alignments of the three data sets used for phylogenetic reconstructions had the following main characteristics: "main data set": 143 sequences, 809 amino acids, B-B2-C-C2 data set: 19 sequences, 667 amino acids, "invertebrate data set": 26 sequences, 2309 amino acids.
Using another medaka inbred strain HSOK as an outgroup to Hd-rR and HNI (Fig. 3a), we were able to obtain inferences for the ancestral bases of Hd-rR and HNI at positions where multiple alignments of the three strains were available (Methods).
Whole genome alignments of the nine H. pylori test strains were performed using Mauve version 2.3.1.
Putative recombination events in intrapatient sequence alignments of the two genome regions were detected using RDP 3.0b03 [95].
Figure 3, Figure 4 and Figure 5 show the alignments of the four subfamilies.
