Sentence examples for alignments of groups from inspiring English sources

The resulting alignments of groups I to VI are available as FASTA format files (see Additional file 4; Additional file 5; Additional file 6; Additional file 7; Additional file 8; Additional file 9).

Phylo is a game in which the four bases in DNA are represented by blocks of different colour: the aim of the game is to move groups of blocks to the left and right in order to find the best possible alignment of groups with each other.

Alignment of groups of novel, peripheral, environmental sequences thus revealed by network analyses can guide the design of new sets of primers which will be useful to expand our knowledge of microbial diversity, moving it further away from the current status quo and its logical starting point: the sequences of cultured organisms.

The amino acid sequence alignment of Group 1 LILRs also predicts that LILRA3 recognizes classical HLAIs less well than LILRA1, LILRB1, and B2, as well as that LILRA3 may recognize the fHCs of classical HLAIs.

SPADA was run with an e-value of 0.1 on all available plant genomes (Table 1) using an HMM profile based on the multiple sequence alignment of group 567 from Graham et al. (2004).

We used two criteria to estimate the reliability of MSAs: 1) the core index, part of the standard output of Psi-coffee [ 93]; and 2) for the noda/chropara groups, the coherence between the alignments of each group separately and the alignment of both groups.

A Fortran library of algorithms (Par_Seq) has been designed and used in searching for the similarity of sequence motifs extracted from the multiple sequence alignments of diverse groups of proteins (query motifs) and the target motifs which are encoded in various genomes.

One such example of the data enrichment is the generation of multiple sequence alignments of the groups of orthologues.

Predicted metazoan protein sequences were searched against the HMM profiles created from the alignments of eggNOG groups using HMMER software [ 28].

To correct for OGs containing multiple fragments of the same CDS, the alignments of all groups that had co-orthologous proteins from the same genome (i.e., apparent paralogs) were subjected to further investigation.

The reads are partitioned into p equal-sized groups in both samples, and an ACT-Graph is created from the alignments of each group of N / p reads.