Sentence examples for alignments into from inspiring English sources

We used the online NAST-based algorithm available from the Greengenes website [ 64] to align the 16S rRNA genes, imported alignments into ARB and exported the alignment using lanemaskPH to remove hypervariable regions [ 65].

For the 500 bp PET libraries sequenced on the HiSeq 2000, we aligned each lane of data in parallel, merged alignments into a single file and inferred fragment size distributions using tools within the ABySS package.

This is not the sort of novel to force such alignments into congruence but they link The Last Hundred Days to a wider European experience outside the communist enclave of Bucharest.

We concatenated all single gene alignments into a supermatrix alignment using Scafos [43].

We further investigate possible benefits of including suboptimal alignments into the score.

We divided the input multiple alignments into overlapping windows of 300 nt with a step size of 100 nt.

The approach taken in aligning the sequences was hierarchical in nature, combining automatic alignment of closely related sequences and the merger of such small alignments into larger alignments, each containing all the sequences belonging to a specific OR family.

For visualization of the trimmed target regions and probes, we converted the trimmed alignments into Affymetrix' "link.psl" format and viewed them in the Integrated Genome Browser, an open source, freely-available interactive desktop genome browser tool (http://igb.bioviz.org).

When comparing both proposed kernel scores, one incorporating all suboptimal alignments into the score, the other only using the optimal alignment, we noticed differences between the two tree topologies: In the 18-taxa case both variants perform equally well.

JG implemented VCM alignments into HeTOP.

We split the sites of the alignments into three classes.