The phrase "alignments in the second" is grammatically correct but may lack clarity without context.
You can use it when discussing specific alignments or arrangements that occur in a second instance or phase of a process.
Example: "The alignments in the second phase of the project were crucial for its success."
Alternatives: "arrangements in the second" or "positions in the second".
Since alignments can be ranked, correct assignments will be saved as unique alignments in the first filtering step (Figure S1).
The alignments in the first two classes were further processed using the Alpheus pipeline (Miller et al. 2008) for deriving per-gene read counts and sequence polymorphism calls.
After 80 alignments in the fourth category were removed, each of the 299 remaining alignments was filtered to eliminate redundant or incomplete sequences (less than 50% of the average length of the alignment) using neighbor-joining (NJ) distance trees with bootstrapping (BP) using SeaView version 4.4.0 [ 60].
The framework contains hand-curated reference phylogenies and alignments; in the first full release that we describe here (MLTreeMap version 2.011), these references encompass a total of 44 distinct gene families that have been selected to address both taxonomic as well as functional aspects of microbial assemblages.
Holmes sustained the injury — to his Lisfranc ligament, a band of tissue that connects the front of his foot to the midfoot and is essential in maintaining the foot's alignment — in the fourth quarter of the Jets' 34-0 loss to San Francisco on Sunday.
The major difference in the alignment occurred starting from amino acid position 95 and there was shift in the alignment in the fifth helix.
Despite the difference in the alignment in the fifth helix, the overall topology of the full-length Rev exon 2 is very similar to that of the truncated version (a.a. 31 145) shown in Fig. 3A.
Combination with FTIR, EDX, and SAXS measurements led to the conclusion that cyanometallate structures are retained in the gel, even if structural alignment in the third dimension is disrupted.
The first step performs a pre-detection of signatures alignment, and in the second step the alignment is corrected and the signatures are detected by a matcher.
These proteins are subjected to rigorous and computationally expensive structure alignment methods in the second step, which is known as a match step.
