The phrase "alignments in the middle of" is correct and usable in written English.
It can be used when discussing the positioning or arrangement of elements within a central area or context.
Example: "The alignments in the middle of the diagram help to clarify the relationships between the different components."
Alternatives: "arrangements at the center of" or "positions within the core of".
Chromosome alignment in the middle of the bipolar spindle is a hallmark of metazoan cell divisions.
The region of similarity was found to lie at either ends in the alignments or in the middle of alignment flanked by gaps. Figure 4D shows an example of a region similar at one end.
We would expect fewer insertion and deletion events during protein evolution to preserve the three dimensional structure and thus intuitively less number of gaps interspersed in the alignments especially in the middle of helices and strands [37], [38], [53].
One possible artifact is the NCBI-Blast algorithm favors alignment of sequences in the middle of an alignment over sequences near the two ends.
The 18S rRNA gene sequences were similarly found by BLAST in the assemblies with 100%% sequence identity, split into two alignments due a low complexity region in the middle of the sequence with each alignment having a length of around 250 bp to 400 bp.
Figure 4E shows an example of a region of local similarity in the middle of alignment.
In the middle of the alignment and at its southern end, large caverns were excavated for logistical and operational requirements.
The expression of novel miRNA was defined by summing the count of most abundant tags with no more than 3 overhang mismatches at the termini and no mismatch in the middle of the alignment on the predicted precursor.
Amazingly, in some cases, 2D prediction is shown in the middle of the family alignment (e.g. Csb1).
This could have been a scripting error resulting in inserting a family id and some spacing in the middle of a family alignment.
