The phrase "alignments in order" is correct and usable in written English.
It can be used when discussing the arrangement or organization of alignments, possibly in a technical or analytical context.
Example: "To ensure the project runs smoothly, we need to check that all alignments are in order before proceeding."
Alternatives: "arrangements in place" or "alignments properly organized".
Our findings help develop future capabilities of maneuvering graphene's alignments in order to manufacture novel graphene-based isotropic materials.
A model built in this way can be used to automatically create sub-horizontal geological cross-sections at tunnel level or vertical cross-sections along the alignments in order to define accurately the geo-lithological characteristics along each underground segment during excavation and to calculate the segments lengths in every geological formation along the tunnel.
We used two different methods for generating simulated decoy alignments in order to estimate the false positive rate.
We seed alignments using exact 16-mers and use a high error-cutoff threshold for the alignments in order for overlap detection to be sensitive.
Sequences bearing similarities to two or more different subtypes were further analyzed by Bootscanning (Simplot 2.5 by Stuart Ray,21 http://sray.med.som.jhmi.edu/RaySoft/SimPlot/) and by visual inspection of alignments in order to identify recombination breakpoints.
Our mapping algorithm examined all possible combinations of local alignments in order to identify cases in which a sequence could have multiple mapping options to the genome, i.e., duplicated genes.
In the worst case, step (iii) performs (m - 1) pair-wise alignments in-order following the dendrogram hierarchy.
DNA sequences of yaaW genes were aligned following [Pfam:UPF0174] protein sequence alignment, in order to preserve codon positions in the multiple DNA sequence alignment.
The key idea of the time-aligned phone lattice approach is to find the best time alignment in order to remove pronunciation dictionary and LM constraints.
The nucleotide sequences were aligned using ClustalW [ 60] according to the translated amino-acid alignment in order to keep the codon structure of the coding sequences.
Supersplat aligns RNA-seq data to a reference genome as a gapped alignment in order to empirically define locations representing potential introns.
