The phrase "alignments generated by the" is correct and usable in written English.
It can be used in contexts related to data analysis, programming, or any field where alignments are created or established based on certain criteria or inputs.
Example: "The alignments generated by the algorithm were crucial for improving the accuracy of the model."
Alternatives: "alignments produced by the" or "alignments created by the".
The quality of these alignments was assessed against the implicit sequence alignments generated by the structure-to-structure alignment program TM-align (Zhang and Skolnick, 2005).
The structures of wt hAID and N51A mutant were modeled using the SWISS-MODEL homology-modeling server65, 66 based on alignments generated by the GeneSilico metaserver67 to two structures of the C-terminal catalytic domain of APOBEC3G cytosine deaminase (PDB entries 3V4K and 3E1U) identified as templates.
Due to the complexity of ontology matching process, ontology alignments generated by the automatic ontology matchers should be validated by the users to ensure their qualities, and the technology that makes multiple users collaborate with each other to help the automatic tool create high quality matchings in a reasonable amount of time is called collaborative ontology matching.
On the pilot dataset, Galinter alignments were compared to the alignments generated by the I2I-SiteEngine interface comparison method.
The Integrative Genomics Viewer (IGV) browser was used to independently review sequence alignments generated by the Miseq Reporter [ 21].
The goal of the filter step is to eliminate as many false positive alignments generated by the seed step as possible, and in the fastest possible way.
The structural alignments generated by these searches showed that the transcobalamin C-terminal domain aligns completely with all core structural elements of the β-GF, including a β-sheet of 5 strands and a helix between strands 2 and 3.
However, the correctness of the alignments generated by these methods is difficult to assess objectively since little is known about the exact evolutionary history of most proteins.
Starting from the "most conserved" track for each alignment generated by the Phastcons program, we padded the genomic coordinates by 25 bps on both sides.
A phylogenetic tree was also calculated based on the alignment generated by the MAFFT program.
Combined (Tophat + bowtie2) sequence alignment generated by the two-step alignment approach served as input file for HTSeq.
