All the sub-optimal alignments from both aligners were from datasets with a 10% error rate.
Models were also built for the implicit sequence alignments from TM-align.
Therefore, with the help of the sharing map, we can 'restore' these missed alignments from existing aligner's result.
In addition, specificity is ensured by statistically separating the true alignments from spurious matches using phred quality values.
Re-estimate the leaf values and HMM transition parameters based on the alignments from four and most recent DTAMs. 6.
Two methods of automatically determining boundary alignments from EBSD maps, the marching Radon transform and triple junction analysis methods, are compared and shown to produce comparable results.
A crash prediction model proposed in the Highway Safety Manual (HSM) is adopted to evaluate and compare alternative alignments from safety perspective.
Examples of ROCS versus AR-0.73 alignments from Figure 7. Left side: Query (yellow), ROCS alignment (dark blue) and AR alignment (cyan).
SH2 sequence alignments from different Csks, Chks, and SFKs show that C122 and C162 are found in most Csks (Fig. 1B).
The multiple alignments from the five structural motifs in actin were plotted using WebLogo [18].
Therefore it is not surprising that the alignments from different methods disagree.
