Sentence examples for alignments can be obtained from inspiring English sources

For these sequences, the default version of DIALIGN produces serious mis-alignments where entire genes are incorrectly aligned, but meaningful alignments can be obtained if the known gene boundaries are used as anchor points.

The main advantage of our approach is that a large number of tradeoff (i.e., non-dominated) alignments can be obtained by a single run with respect to conflicting objectives: affine gap penalty minimization and similarity and support maximization.

For flexible superposition we demonstrate on a large data set of crystal structures how accurate alignments can be obtained rapidly (less than one second per molecule) in an automated fashion.

This work shows that substantial improvement in local alignments can be obtained by careful assessment of the local structure of the resulting models.

Moreover, for some congeneric pairs no reliable alignments can be obtained at level of NCR and of some rRNA regions.

Such comparisons are limited to cases in which the noncoding sequences are not too strongly diverged so that reliable sequence alignments can be obtained.

Once the nearest coincident points to the apex is identified, both the overlap angle and the degree of graphitic alignment can be obtained.

Another kind of collectors is using two or more parallel electrodes so that excellent alignment can be obtained on each electrode based on air holes through the electrodes that cause electrostatic rebuttal between the fibers [31, 32, 33].

Although the method estimates a tree directly from nucleotide variation and length differences, an 'implied alignment' can be obtained post-hoc for further searches and diagnostics [45], including ML analyses and bootstrap resampling.

The sequence alignment can be obtained from CyMoBase or Additional file 10.

The phylogenetic shadowing principle is used to assume a multiple sequence alignment can be obtained from closely related species [ 28].