The phrase "alignments between the two" is correct and usable in written English.
It can be used when discussing similarities, agreements, or connections between two entities, concepts, or groups.
Example: "The report highlights the alignments between the two organizations in their goals and strategies."
Alternatives: "correspondences between the two" or "congruences between the two".
The amino acid sequence alignments between the two ComX precursor proteins, however, showed that their conservation is only restricted to the N-terminal ends.
Pairwise alignments between the two rice lines were performed by BlastZ [ 36].
Finally, we have many-to-many X-orthologous alignments between the two species.
The last condition is verified by checking for possible overlaps among all local alignments between the two sequences.
Identity, contiguous matches, and near-contiguous matches between a probe and a target/non-target genome are computed from the BLAST alignments between the two.
The S-LAGAN chaining takes as input a set of local alignments between the two sequences and returns the maximal scoring subset of these under certain gap criteria.
Inconsistency was assessed for all positions in any triplet of aligned structures where all pairwise alignments between the three were above a particular threshold.
The overall performance of the taluka is the result of how the alignments between the four poles are perceived locally and managed.
To decrease the order of the dynamic programming algorithm to O(L), we consider imposing the additional constraint, which we call C1(A, τ, O), that the alignments between the three nodes connected to O remain fixed.
As a distance measure, we used the averaged Kullback-Leibler distances (AKLD) per site over the aligned length between the corresponding positions of two matrices (we chose the alignment between the two matrices that gave the smallest distance).
To correct for alignment between the two channels, live images were adjusted by hand to align the emission pathway to overlap in both channels by imaging 200 nm tetraspeck beads (Molecular Probes, Eugene, OR).
