The phrase "alignments because of the" is grammatically correct and can be used in written English.
It can be used when discussing the reasons or factors that lead to certain alignments in various contexts, such as organizational, strategic, or personal alignments.
Example: "The alignments because of the recent changes in management have significantly impacted team dynamics."
Alternatives: "alignments due to the" or "alignments resulting from the".
At the least, paired-end reads yield higher quality alignments, because of the extra constraints on mate pair distance and alignment orientation.
The Gypsy sequences D. sechelliaA6/B14/B15, D. yakubaA6 and D. erectaA2/A6/B9, and the Micropia sequences D. simulansA3/A6, D. sechelliaA9/A18/A20 and D. yakubaA3, were excluded from those alignments because of the presence of indels (>2 bp) disrupting the open reading frames.
A total of 18 OsGELP genes were excluded from the final alignment because of the absence of some conserved GDSL blocks and poorly matched alignable regions with gaps.
When the plant was started up for testing on schedule in October, the 14-ton vacuum tanks crept out of alignment because of the power of the magnets, and had to be fastened more securely.
It is difficult to provide phylogenetic evidence showing the evolutionary relationship between LRR-domains, due to problems in sequence alignment because of the repetitive nature and high diversity of the sequences [15].
If invariant and variant sites distributed randomly in the original alignment, the frequency of invariant sequences in the permuted alignments would show similar frequency to the original alignment because of the randomness at the start point.
Overextension occurs more frequently in higher identity alignments because of target identity mismatch, but the majority of overextension we measured occurs by chance in low identity alignments, because most of our alignments are low identity.
The use of features completely avoided the problems of the seq alignment, because, differently from seq, the feat alignment is completely independent from the RMSD and, thus, from its local minima.
We illustrated our approach with several alignment examples of known and hypothetical frameshifted proteins, some of which are not detectable via classic alignment methods because of the low coding sequence similarity.
BLAT was used in preference to BLAST for genome alignments because of its superior speed.
Indeed, some motifs (as we have seen for TATA-boxes) might show enrichment in orthologous promoter sets when analyzed independently but fail to show higher conservation scores in multiple sequence alignments because the exact location of the binding site can shift during evolution [ 62].
